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Friday, September 03, 2004

Neurulation in zebrafish

Echoed on the Panda's Thumb

Neurulation is a series of cell movements and shape changes, inductive interactions, and changes in gene expression that partitions tissues into a discrete neural tube. It is one of those early and significant morphogenetic events that define an important tissue, in this case the nervous system, and it's also an event that can easily go wrong, producing relatively common birth defects like holoprosencephaly and spina bifida. Neurulation has been a somewhat messy phenomenon for comparative embryology, too, because there are not only subtle differences between different vertebrate lineages in precisely how they segregate the neural tissue, but there are also differences along the rostrocaudal axis of an individual organism. A recent review by Lowery and Sive, though, tidies up the confusion and pulls disparate stories together.

Anyone who has been exposed to a little developmental biology knows the basics of neurulation: you take a flat sheet of cells and roll it up into a cylinder. The sheet is the early embryonic ectoderm, and the cylinder that results is the neural tube with its central lumen, or opening. This isn't the only way to do it, though. The neural tube can also form by the condensation of loosely scattered cells, the mesenchyme, diagramed below. Rolling up a sheet of cells is called primary neurulation, while building a new neural epithelium from mesenchyme is called secondary neurulation. Both can occur in the same animal. Secondary neurulation is common in the tail, which develops in a rostrocaudal sequence without the convenience of initial organization into simple sheets.

neurulation
Comparison of primary and secondary neurulation. (a) Primary neurulation involves columnarization of an existing epithelium, and then rolling or folding the epithelium (blue). (b) secondary neurulation is characterized by condensation of mesenchyme (brown) to form a rod, which then undergoes an epithelial transition to form the neural tube.

The ready interchange of epithelium and mesenchyme is something we also see elsewhere, in gastrulation: some organisms form mesoderm by delamination and migration of mesenchyme, others by the more coherent ingression of epithelial sheets. The developmental program that gets cells from one place and one tissue to another seems to work well enough whether the individual cells are holding hands in adherent sheets, or moving independently.

Another subtle distinction that gets at my particular interests in teleost (fish) development is precisely how the neural tube folds up. There are again regional and species differences in the process, and for a long time teleosts were thought to be oddballs that didn't do primary neurulation at all—fish nervous systems were thought to form by a thickening of the neural plate ectoderm and secondary cavitation to form the lumen, and they even got a special name, the neural keel. Closer examination has revealed that that is not entirely correct. Fish neural tubes do form by a medial migration of neural plate cells that is just like the medial movements of primary neurulation…it's just that cells along the midline cling tightly together, making a nearly invisible seam rather than a long open ditch.

tube closure
Variations of primary neurulation. The neural tube is shown at the open stage (top row) and after initial closure (bottom row) (see also Fig. 1). The initial flat neuroepithelium may roll smoothly into a tube (a), bend sharply at one (b) or more (c) hinge points, or form a solid rod of cells (d).
zebrafish neurulation
Zebrafish trunk neurulation. An initial epithelium columnarizes to form the neural plate, which then forms a solid neural keel and solid tube. The midline of the tube becomes distinct and a lumen opens from ventral to dorsal. Neural plate cells lineage labeled prior to neural keel formation (red and green) maintain their relative positions during neural tube formation, indicating that cells form the keel by cryptic rolling or folding. The derivation of the zebrafish neural tube from an epithelium and the cell movements involved are typical of primary neurulation.

Lowery and Sive make a special effort to endear themselves to me by describing the development of one species in particular, my favorite experimental animal, the zebrafish Danio rerio. Much work on this particular problem has been done in recent years on the zebrafish (including some by my graduate advisor, Chuck Kimmel) using lineage tracer dyes, time-lapse imaging, and confocal microscopy. There are even a few confocal movies of neural tube dynamics online at Mark Cooper's lab if you want to see a bit of what I'm talking about.

The diagram to the left illustrates different stages in the formation of the zebrafish neural tube. It first forms by a thickening, or columnarization, of the ectodermal epithelium to form a classic neural plate. The structure thickens yet further into a neural keel by a movement of cells in the sheet towards the midline; the only real difference between this and what goes on in a chick or a mouse is that the apical ends of the cells are adherent and closure forms a tight seam rather than throwing up folds around a groove…but they are topologically identical.

There are a few differences. Some teleost cells can cross the midline during neurulation (shown by the red cell lineage in the diagram), suggesting more lability and that the cells of the teleost neural plate may have some mesenchymal character. As I've said, and as Lowery and Sive say, epithelia and mesenchyme are part of a continuum, and are not entirely incompatible cell states.

After neural keel formation, the nervous tissue forms a rod-like structure and separates from the surrounding ectodermal epithelium. One of the factors that we know is involved in this process is the expression of different adhesive cell surface molecules in the ectodermal epithelium and the neural tube—for instance, N-cadherin is expressed in the neural cells, and E-cadherin in the skin. Zebrafish do this as well, and we even have mutants (parachute and glass onion) in N-cadherin that cause neural tube defects.

Speaking of mutants, another purpose of the Lowery and Sive paper is to make a case for the zebrafish as a promising and productive model system for studying neurulation. They've already made the case that teleost neural tube formation is entirely comparable to the processes going on in other vertebrates, and it has the additional advantage of being a practical system for doing molecular genetics. The mouse may be an even better system now (but we're going to catch up!), but mouse embryos are unfortunately imbedded in a meaty bloody mother, and the mouse doesn't afford the simplicity of access that we can get in an externally developing embryo like the fish.

Here's a handy short list of mutants that disrupt neurulation that are available right now:


Zebrafish mutants that affect neurulation
MutantGeneFunction/Phenotype
Trilobitevangl2PCP pathway defects in cell movement
Grumpylamb1Adhesion (laminin beta 1) notochord and brain defects
Heart and soulPKCλEpithelial Polarity retina/neural tube defects
Nagie okonokEpithelial Polarity (MAGUK) retina/ brain defects
Parachute/ Glass onionn-cadCell Adhesion neural tube/eye defects
Sleepylamc1Adhesion (laminin gamma 1) irregular brain shape
Sonic youshhHedgehog defects in neural patterning
One eyed pinheadoepNodal (EGF-CFC member and a co-receptor for nodal) cyclopia, mutation in human holoprosencephaly
Masterblindaxin1Neural specification reduced eye/forebrain
Necklessaldh1a2Neural specification (retinaldehydrogenase type 2) defects in neural tube and paraxial mesoderm
Somitabunsmad5Neural specification expansion of neuroectoderm
Lock jaw/ Mont blanctfap2aNeural crest development

The paper is actually a platform for a big proposal to use zebrafish to search for more molecules involved in neurulation.

A crucial goal is to perform large scale genetic screens to isolate a large set of neurulation mutants. This could be achieved by chemical or insertional screening. Genetic screens in the zebrafish are feasible for two reasons. First is the set of attributes that make zebrafish a good genetic model: short generation time, large clutch size and inexpensive breeding. Second is the ease with which fish embryos can be viewed: the neural plate is visible in the unmanipulated embryo, or where a neurectoderm-specific promoter drives a lineage marker such as GFP. These attributes are not found in mammalian embryos, and while amphibian embryos are easy to view, the current lack of genetic techniques is a deficit. A second goal is to test the set of genes implicated in mammalian or amphibian neurulation, by defining zebrafish mutants in these genes. While gene ‘knockout’ by homologous recombination in ES cells is not yet available for the zebrafish, PCR-based screening for mutations in specific genes is possible and promising. Molecular inhibition of gene function by injection of antisense morpholino-based oligonucleotides into zebrafish embryos has also proven effective. A third goal that is a logical outcome of the others is to examine interactions between genes, using epistasis analysis and other methods. For example, double mutants can be constructed by standard genetic crosses, or by a combination of molecular and genetic techniques, where antisense oligonucleotides are injected into embryos mutant for a single gene. Definition of a a large, perhaps comprehensive, set of neurulation mutants would be a huge step for the field.

Hey, I think it's a great idea, and I'm all for it.


Lowery LA, Sive H (2004) Strategies of vertebrate neurulation and a re-evaluation of teleost neural tube formation. Mechanisms of Development 12:1189-1197.


Trackback url: http://pharyngula.org/index/trackback/1160/kkGU1KJS/

Comments:
#5746: Jody — 09/03  at  11:40 AM
Anyone who has been exposed to a little developmental biology knows the basics of neurulation...


I didn't.

I feel like such an uneducated boob.

[mope] Sigh. [/mope].

The mutations that you catalogue -- those are just in zebra fish correct? The implications for this are that we can look for similar mutations in humans, ad in a corresponding matched mutated gene, and thus prevent the mutation altogether?

Or am I back to just being an uneducated boob?

:^)



#5747: corsair the rational pirate — 09/03  at  11:43 AM
I, of course, don't understand a word of this post. I would like to but there are only so many hours in the day to learn things.

But what I would like to know is how long someone who does understand it take to write it all up like this and get the graphics together and make it all pretty? Is this an off the top of your head kind of thing or is it weeks of research?

Very impressive either way.



's avatar #5748: PZ Myers — 09/03  at  11:48 AM
Look on the bright side -- you just learned the basics of neurulation, so you're not an uneducated boob anymore!

And yes, those are just zebrafish mutations, although all of them are also matched to homologous genes in us (PKCs and SMADs and CADs are well known). And the idea is that if we screen for mutants in something cheap and fast like a zebrafish, we can use that information to look for similar genes in people, without having to to the experiment of exposing people to mutagens and then sifting through their progeny searching for deformed babies. So yeah, you got it right (turn in your uneducated boob badge at the front desk, please.)

PZ Myers
Division of Science and Math
University of Minnesota, Morris



's avatar #5749: PZ Myers — 09/03  at  12:09 PM
Time?

I got the paper yesterday, read it carefully in about 20 minutes...although I suppose years of training in reading scientific papers and lots of experience with this very subject helped. It took maybe another 20 minutes to yank the figures I used out of the paper, and a half hour (45 minutes? I didn't keep track) to write up the text. So it's not exactly off the top of my head, but it isn't weeks of work, either.

I have to confess that I think us science bloggers have the easiest job in the blogosphere. There are these huge volumes of untapped information lying in the libraries and coming out anew in the journals all the time, and all I need to do is dip my hand into the reservoir and pull up a single tiny drop, and I've got an entry. And it's part of my day job to read this stuff, and another part is to pull together digests of current ideas for the classroom, so heck, I don't understand why there isn't a flood of science blogging going on.

Although I am a little dismayed that my only two comments so far are that there's a comprehension problem. I guess I need to work at that a bit more.

PZ Myers
Division of Science and Math
University of Minnesota, Morris



#5750: Jody — 09/03  at  12:53 PM
I'm used to reading psycho-babble case studies and a research papers that blow vaguely windward when the blowhards that present them cease speaking. Actually reading deep science stuff forces my brain to actually work. All those big words that actually mean something, you see.

If that sounds like I'm ribbing my former profession, in this age of Dr. Phil, Oprah and What Would Jesus Do? treatment modalities, yes I truly am jabbing a long, sharp, pointy finger into the ribs of the Body Psychology.

I actually read a lot of the "hard science translated more or less into English" books. Things like Ghost in the Machine, The Universe in a Nutshell and The Man who would be Queen. They break the big words down into nice, bite size pieces and make it easier for me to sparkle bits of high-falootin science words throughout my screenplays.

Don't worry though, Doc. If I ever sell and produce my stuff, I will need an insanely well paid science advisor to sit on set, raid the craft services table and tell the actors how to pronounce said big words.



#5751: — 09/03  at  02:15 PM
So the neural tube is... what becomes the spinal cord and brain?

"Anyone who has been exposed to a little developmental biology knows the basics of neurulation: you take a flat sheet of cells and roll it up into a cylinder."

I remember seeing a lot of pictures like that in my 9th-grade biology textbook, because the development chapter was right between two of the chapters we *did* learn. smile



's avatar #5752: PZ Myers — 09/03  at  02:24 PM
Yes. Man, I'm going to have to make a post explaining my post, I think.

PZ Myers
Division of Science and Math
University of Minnesota, Morris



#5753: — 09/03  at  02:29 PM
I must admit that I didn't spend too much time pondereing this post, but the parts I skimmed seemed clear enough. Basically all my knowlege of biology has come from reading talk.origins, so I doubt that any prior knowlege made the going any easier. Well done, PZ.

I did find the movies you linked to totally mysterious, though. They just looked like slimy things sliding around to me.



#5761: corsair the rational pirate — 09/03  at  07:53 PM
No no no. You don't have a comprehension problem, I do! I don't even pretend to be the least bit knowledgeable in biology... or whatever it is you talk about here. Though I would like to be. The reason I started coming here was for more info to fight fundie ignorance. That I get. It is the hard stuff that makes my head hurt.

Instead of working on newrol... neuril... new... zebrafish, couldn't y'all science guys work on implanting knowledge directly into my less-than-stellar cerebral cortex so I could understand cool stuff like this?

Keep up the posts. Some of it might be sinking in.



#5769: Michael Buratovich — 09/04  at  10:45 AM
PZ,

What is the best and earliest marker for neural crest cells in zebrafish? Is there a slug ortholog that is expressed early and if so, what is its mutant phenotype?

Also has anyone made Wnt3 mutations in zebrafish yet?



#5770: — 09/04  at  02:56 PM
PZ, this could be the break into showbiz you've been waiting for, as long as Jody can interest a producer in a movie about the fast-paced dynamic world of zebrafish development.



#5771: — 09/04  at  03:02 PM
A nicely comprehensible post, I thought (the diagrams made things a lot easier to follow).

I did have to google for `mesenchyme', though: it dropped out of my head in the decade since I last formally studied biology (with someone who refused to teach molecular biology or animal developmental biology at all, and concentrated on, of all things, plant growth. A better way of turning off a lot of students I can't imagine.)



's avatar #5785: PZ Myers — 09/05  at  07:47 PM
I don't know of any wnt3 mutants, but there are morpholino knockdowns. I'm not the person to ask what the best early marker for neural crest is -- back in the day when I was playing with this stuff, we used HNK-1, but we didn't have a lot of choices in markers back then.

I know there is a single slug ortholog in zebrafish, and I recall that it is not expressed in premigratory neural crest, but I don't know offhand what happens to the slug mutant...I'd have to look it up. Sorry. I'd say the experts to contact would be the Thisses at Strasbourg, or Dave Raible at the U of Washington.

PZ Myers
Division of Science and Math
University of Minnesota, Morris



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